Data analysis

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Preprocessing and normalization in histoCAT

Last post by JaJeago « Mon Nov 02, 2020 3:37 pm
Replies: 6
by erikg » Wed Mar 14, 2018 3:48 pm

6 Replies

8066 Views

Last post by JaJeago
Mon Nov 02, 2020 3:37 pm
Trouble with spillover matrix calculation r-script

Last post by votti « Tue Oct 20, 2020 3:53 pm
Replies: 1
by asasama12 » Tue Oct 13, 2020 8:53 pm

1 Replies

622 Views

Last post by votti
Tue Oct 20, 2020 3:53 pm
Trouble with spillmatrix RMD script

Last post by asasama12 « Thu Oct 08, 2020 7:41 pm

by asasama12 » Thu Oct 08, 2020 7:41 pm

0 Replies

750 Views

Last post by asasama12
Thu Oct 08, 2020 7:41 pm
Normalization across ROIs in different sample batches

Last post by MalteLehmann « Thu Sep 24, 2020 10:57 am

by MalteLehmann » Thu Sep 24, 2020 10:57 am

0 Replies

1338 Views

Last post by MalteLehmann
Thu Sep 24, 2020 10:57 am
Can we reduce Ab noise in downstream analysis?

Last post by Hinsamoy « Sun Sep 20, 2020 2:43 am

by Hinsamoy » Sun Sep 20, 2020 2:43 am

0 Replies

742 Views

Last post by Hinsamoy
Sun Sep 20, 2020 2:43 am
Issue with running Phenograph

Last post by 13sjc10 « Sun Sep 13, 2020 10:15 pm

by 13sjc10 » Sun Sep 13, 2020 10:15 pm

0 Replies

701 Views

Last post by 13sjc10
Sun Sep 13, 2020 10:15 pm
Issues with mask/histoCAT segmentation

Last post by cjauset « Fri Aug 28, 2020 2:17 pm
Replies: 5
by cjauset » Mon Aug 24, 2020 1:42 pm

5 Replies

2316 Views

Last post by cjauset
Fri Aug 28, 2020 2:17 pm
Call for tutorials

Last post by juan.ojeda « Sun Jun 21, 2020 8:11 pm

by juan.ojeda » Sun Jun 21, 2020 8:11 pm

0 Replies

3133 Views

Last post by juan.ojeda
Sun Jun 21, 2020 8:11 pm
Graphs from cvs and txt files.

Last post by DenisSchapiro « Sun Feb 16, 2020 8:28 pm
Replies: 1
by Carmen » Mon Feb 03, 2020 10:17 pm

1 Replies

3670 Views

Last post by DenisSchapiro
Sun Feb 16, 2020 8:28 pm
Creating ome.tiffs from .mcd via Jupyter Notebook

Last post by votti « Tue Jan 07, 2020 3:52 pm
Replies: 1
by MalteLehmann » Fri Dec 20, 2019 4:33 pm

1 Replies

2926 Views

Last post by votti
Tue Jan 07, 2020 3:52 pm
Problems with generating ome.tiffs with python script

Last post by MalteLehmann « Fri Dec 20, 2019 1:43 pm

by MalteLehmann » Fri Dec 20, 2019 1:43 pm

0 Replies

4501 Views

Last post by MalteLehmann
Fri Dec 20, 2019 1:43 pm
question about the neighborhood analysis heatmap

Last post by DenisSchapiro « Tue Dec 17, 2019 8:27 pm
Replies: 1
by dalide » Thu Dec 05, 2019 5:50 pm

1 Replies

3330 Views

Last post by DenisSchapiro
Tue Dec 17, 2019 8:27 pm
HistoCAT 1.76 from github repo not installing on Mac - Matlab Runtime issue?

Last post by DenisSchapiro « Mon Dec 16, 2019 5:06 pm
Replies: 1
by tdmckee » Wed Dec 11, 2019 8:49 pm

1 Replies

2938 Views

Last post by DenisSchapiro
Mon Dec 16, 2019 5:06 pm
Loading a new HistoCAT Session with previous Phenographs/gates?

Last post by DenisSchapiro « Wed Nov 06, 2019 9:49 pm
Replies: 1
by julianolea » Wed Oct 16, 2019 7:03 pm

1 Replies

3796 Views

Last post by DenisSchapiro
Wed Nov 06, 2019 9:49 pm
HistoCAT reading mask as a channel, not a mask

Last post by DenisSchapiro « Mon Oct 07, 2019 10:28 pm
Replies: 1
by Channels » Thu Oct 03, 2019 3:46 am

1 Replies

3187 Views

Last post by DenisSchapiro
Mon Oct 07, 2019 10:28 pm
IMC data transformation and normalisation across ROI

Last post by votti « Sat Sep 07, 2019 8:15 am
Replies: 2
by acoenen » Fri Aug 23, 2019 10:09 am

2 Replies

4530 Views

Last post by votti
Sat Sep 07, 2019 8:15 am
CellProfiler error

Last post by monirathhav « Sat Aug 24, 2019 4:45 am

by monirathhav » Sat Aug 24, 2019 4:45 am

0 Replies

5613 Views

Last post by monirathhav
Sat Aug 24, 2019 4:45 am
Export cell coordinates in histocat++

Last post by Seb « Thu Aug 08, 2019 9:04 pm
Replies: 2
by Seb » Wed Aug 07, 2019 4:02 pm

2 Replies

3748 Views

Last post by Seb
Thu Aug 08, 2019 9:04 pm
Merge ROIs from IMC

Last post by Seb « Fri Aug 02, 2019 7:52 pm
Replies: 2
by Seb » Thu Aug 01, 2019 6:53 pm

2 Replies

3839 Views

Last post by Seb
Fri Aug 02, 2019 7:52 pm
Cell population frequencies in HistoCat

Last post by DenisSchapiro « Fri Aug 02, 2019 6:33 pm
Replies: 12
by mattbliss90 » Tue Jul 24, 2018 6:12 pm
1

2
12 Replies

15446 Views

Last post by DenisSchapiro
Fri Aug 02, 2019 6:33 pm
HistoCAT++ crashing when trying to filter

Last post by RaulCatena « Fri Aug 02, 2019 7:56 am
Replies: 1
by Channels » Thu Jun 27, 2019 1:46 am

1 Replies

3204 Views

Last post by RaulCatena
Fri Aug 02, 2019 7:56 am
Histocat - Differential cell neighborhood analysis

Last post by DenisSchapiro « Wed Jul 31, 2019 7:38 pm
Replies: 3
by sbooth » Tue Apr 23, 2019 11:36 pm

3 Replies

9136 Views

Last post by DenisSchapiro
Wed Jul 31, 2019 7:38 pm
any preprocessing before doing the analysis?

Last post by dalide « Tue Jun 04, 2019 8:52 pm

by dalide » Tue Jun 04, 2019 8:52 pm

0 Replies

6075 Views

Last post by dalide
Tue Jun 04, 2019 8:52 pm
Custom masks

Last post by chipboy « Wed Apr 17, 2019 2:46 pm

by chipboy » Wed Apr 17, 2019 2:46 pm

0 Replies

5851 Views

Last post by chipboy
Wed Apr 17, 2019 2:46 pm
histoCAT on Mac - tiny display fonts

Last post by DenisSchapiro « Mon Mar 11, 2019 7:58 pm
Replies: 1
by stoh » Tue Feb 05, 2019 8:35 pm

1 Replies

4082 Views

Last post by DenisSchapiro
Mon Mar 11, 2019 7:58 pm

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