Data analysis

New Topic

49 topics

Topics

Replies

Views

Last post

Trouble with spillover matrix calculation r-script

Last post by votti « Tue Oct 20, 2020 3:53 pm
Replies: 1
by asasama12 » Tue Oct 13, 2020 8:53 pm

1 Replies

52 Views

Last post by votti
Tue Oct 20, 2020 3:53 pm
Trouble with spillmatrix RMD script

Last post by asasama12 « Thu Oct 08, 2020 7:41 pm

by asasama12 » Thu Oct 08, 2020 7:41 pm

0 Replies

25 Views

Last post by asasama12
Thu Oct 08, 2020 7:41 pm
Normalization across ROIs in different sample batches

Last post by MalteLehmann « Thu Sep 24, 2020 10:57 am

by MalteLehmann » Thu Sep 24, 2020 10:57 am

0 Replies

514 Views

Last post by MalteLehmann
Thu Sep 24, 2020 10:57 am
Can we reduce Ab noise in downstream analysis?

Last post by Hinsamoy « Sun Sep 20, 2020 2:43 am

by Hinsamoy » Sun Sep 20, 2020 2:43 am

0 Replies

25 Views

Last post by Hinsamoy
Sun Sep 20, 2020 2:43 am
Issue with running Phenograph

Last post by 13sjc10 « Sun Sep 13, 2020 10:15 pm

by 13sjc10 » Sun Sep 13, 2020 10:15 pm

0 Replies

19 Views

Last post by 13sjc10
Sun Sep 13, 2020 10:15 pm
Issues with mask/histoCAT segmentation

Last post by cjauset « Fri Aug 28, 2020 2:17 pm
Replies: 5
by cjauset » Mon Aug 24, 2020 1:42 pm

5 Replies

1496 Views

Last post by cjauset
Fri Aug 28, 2020 2:17 pm
Call for tutorials

Last post by juan.ojeda « Sun Jun 21, 2020 8:11 pm

by juan.ojeda » Sun Jun 21, 2020 8:11 pm

0 Replies

2329 Views

Last post by juan.ojeda
Sun Jun 21, 2020 8:11 pm
Graphs from cvs and txt files.

Last post by DenisSchapiro « Sun Feb 16, 2020 8:28 pm
Replies: 1
by Carmen » Mon Feb 03, 2020 10:17 pm

1 Replies

3222 Views

Last post by DenisSchapiro
Sun Feb 16, 2020 8:28 pm
Creating ome.tiffs from .mcd via Jupyter Notebook

Last post by votti « Tue Jan 07, 2020 3:52 pm
Replies: 1
by MalteLehmann » Fri Dec 20, 2019 4:33 pm

1 Replies

2470 Views

Last post by votti
Tue Jan 07, 2020 3:52 pm
Problems with generating ome.tiffs with python script

Last post by MalteLehmann « Fri Dec 20, 2019 1:43 pm

by MalteLehmann » Fri Dec 20, 2019 1:43 pm

0 Replies

3854 Views

Last post by MalteLehmann
Fri Dec 20, 2019 1:43 pm
question about the neighborhood analysis heatmap

Last post by DenisSchapiro « Tue Dec 17, 2019 8:27 pm
Replies: 1
by dalide » Thu Dec 05, 2019 5:50 pm

1 Replies

2870 Views

Last post by DenisSchapiro
Tue Dec 17, 2019 8:27 pm
HistoCAT 1.76 from github repo not installing on Mac - Matlab Runtime issue?

Last post by DenisSchapiro « Mon Dec 16, 2019 5:06 pm
Replies: 1
by tdmckee » Wed Dec 11, 2019 8:49 pm

1 Replies

2504 Views

Last post by DenisSchapiro
Mon Dec 16, 2019 5:06 pm
Loading a new HistoCAT Session with previous Phenographs/gates?

Last post by DenisSchapiro « Wed Nov 06, 2019 9:49 pm
Replies: 1
by julianolea » Wed Oct 16, 2019 7:03 pm

1 Replies

3342 Views

Last post by DenisSchapiro
Wed Nov 06, 2019 9:49 pm
HistoCAT reading mask as a channel, not a mask

Last post by DenisSchapiro « Mon Oct 07, 2019 10:28 pm
Replies: 1
by Channels » Thu Oct 03, 2019 3:46 am

1 Replies

2741 Views

Last post by DenisSchapiro
Mon Oct 07, 2019 10:28 pm
IMC data transformation and normalisation across ROI

Last post by votti « Sat Sep 07, 2019 8:15 am
Replies: 2
by acoenen » Fri Aug 23, 2019 10:09 am

2 Replies

3865 Views

Last post by votti
Sat Sep 07, 2019 8:15 am
Preprocessing and normalization in histoCAT

Last post by jonas « Tue Aug 27, 2019 8:58 am
Replies: 5
by erikg » Wed Mar 14, 2018 3:48 pm

5 Replies

6871 Views

Last post by jonas
Tue Aug 27, 2019 8:58 am
CellProfiler error

Last post by monirathhav « Sat Aug 24, 2019 4:45 am

by monirathhav » Sat Aug 24, 2019 4:45 am

0 Replies

4850 Views

Last post by monirathhav
Sat Aug 24, 2019 4:45 am
Export cell coordinates in histocat++

Last post by Seb « Thu Aug 08, 2019 9:04 pm
Replies: 2
by Seb » Wed Aug 07, 2019 4:02 pm

2 Replies

3253 Views

Last post by Seb
Thu Aug 08, 2019 9:04 pm
Merge ROIs from IMC

Last post by Seb « Fri Aug 02, 2019 7:52 pm
Replies: 2
by Seb » Thu Aug 01, 2019 6:53 pm

2 Replies

3289 Views

Last post by Seb
Fri Aug 02, 2019 7:52 pm
Cell population frequencies in HistoCat

Last post by DenisSchapiro « Fri Aug 02, 2019 6:33 pm
Replies: 12
by mattbliss90 » Tue Jul 24, 2018 6:12 pm
1

2
12 Replies

13496 Views

Last post by DenisSchapiro
Fri Aug 02, 2019 6:33 pm
HistoCAT++ crashing when trying to filter

Last post by RaulCatena « Fri Aug 02, 2019 7:56 am
Replies: 1
by Channels » Thu Jun 27, 2019 1:46 am

1 Replies

2771 Views

Last post by RaulCatena
Fri Aug 02, 2019 7:56 am
Histocat - Differential cell neighborhood analysis

Last post by DenisSchapiro « Wed Jul 31, 2019 7:38 pm
Replies: 3
by sbooth » Tue Apr 23, 2019 11:36 pm

3 Replies

8455 Views

Last post by DenisSchapiro
Wed Jul 31, 2019 7:38 pm
any preprocessing before doing the analysis?

Last post by dalide « Tue Jun 04, 2019 8:52 pm

by dalide » Tue Jun 04, 2019 8:52 pm

0 Replies

5342 Views

Last post by dalide
Tue Jun 04, 2019 8:52 pm
Custom masks

Last post by chipboy « Wed Apr 17, 2019 2:46 pm

by chipboy » Wed Apr 17, 2019 2:46 pm

0 Replies

5072 Views

Last post by chipboy
Wed Apr 17, 2019 2:46 pm
histoCAT on Mac - tiny display fonts

Last post by DenisSchapiro « Mon Mar 11, 2019 7:58 pm
Replies: 1
by stoh » Tue Feb 05, 2019 8:35 pm

1 Replies

3659 Views

Last post by DenisSchapiro
Mon Mar 11, 2019 7:58 pm

New Topic

49 topics

Return to Board Index

Forum permissions

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum
You cannot post attachments in this forum