Data analysis

New Topic

43 topics

Topics

Replies

Views

Last post

Call for tutorials

Last post by juan.ojeda « Sun Jun 21, 2020 8:11 pm

by juan.ojeda » Sun Jun 21, 2020 8:11 pm

0 Replies

979 Views

Last post by juan.ojeda
Sun Jun 21, 2020 8:11 pm
Graphs from cvs and txt files.

Last post by DenisSchapiro « Sun Feb 16, 2020 8:28 pm
Replies: 1
by Carmen » Mon Feb 03, 2020 10:17 pm

1 Replies

2399 Views

Last post by DenisSchapiro
Sun Feb 16, 2020 8:28 pm
Creating ome.tiffs from .mcd via Jupyter Notebook

Last post by votti « Tue Jan 07, 2020 3:52 pm
Replies: 1
by MalteLehmann » Fri Dec 20, 2019 4:33 pm

1 Replies

1580 Views

Last post by votti
Tue Jan 07, 2020 3:52 pm
Problems with generating ome.tiffs with python script

Last post by MalteLehmann « Fri Dec 20, 2019 1:43 pm

by MalteLehmann » Fri Dec 20, 2019 1:43 pm

0 Replies

2705 Views

Last post by MalteLehmann
Fri Dec 20, 2019 1:43 pm
question about the neighborhood analysis heatmap

Last post by DenisSchapiro « Tue Dec 17, 2019 8:27 pm
Replies: 1
by dalide » Thu Dec 05, 2019 5:50 pm

1 Replies

1963 Views

Last post by DenisSchapiro
Tue Dec 17, 2019 8:27 pm
HistoCAT 1.76 from github repo not installing on Mac - Matlab Runtime issue?

Last post by DenisSchapiro « Mon Dec 16, 2019 5:06 pm
Replies: 1
by tdmckee » Wed Dec 11, 2019 8:49 pm

1 Replies

1689 Views

Last post by DenisSchapiro
Mon Dec 16, 2019 5:06 pm
Loading a new HistoCAT Session with previous Phenographs/gates?

Last post by DenisSchapiro « Wed Nov 06, 2019 9:49 pm
Replies: 1
by julianolea » Wed Oct 16, 2019 7:03 pm

1 Replies

2467 Views

Last post by DenisSchapiro
Wed Nov 06, 2019 9:49 pm
HistoCAT reading mask as a channel, not a mask

Last post by DenisSchapiro « Mon Oct 07, 2019 10:28 pm
Replies: 1
by Channels » Thu Oct 03, 2019 3:46 am

1 Replies

1891 Views

Last post by DenisSchapiro
Mon Oct 07, 2019 10:28 pm
IMC data transformation and normalisation across ROI

Last post by votti « Sat Sep 07, 2019 8:15 am
Replies: 2
by acoenen » Fri Aug 23, 2019 10:09 am

2 Replies

2712 Views

Last post by votti
Sat Sep 07, 2019 8:15 am
Preprocessing and normalization in histoCAT

Last post by jonas « Tue Aug 27, 2019 8:58 am
Replies: 5
by erikg » Wed Mar 14, 2018 3:48 pm

5 Replies

4975 Views

Last post by jonas
Tue Aug 27, 2019 8:58 am
CellProfiler error

Last post by monirathhav « Sat Aug 24, 2019 4:45 am

by monirathhav » Sat Aug 24, 2019 4:45 am

0 Replies

3694 Views

Last post by monirathhav
Sat Aug 24, 2019 4:45 am
Export cell coordinates in histocat++

Last post by Seb « Thu Aug 08, 2019 9:04 pm
Replies: 2
by Seb » Wed Aug 07, 2019 4:02 pm

2 Replies

2324 Views

Last post by Seb
Thu Aug 08, 2019 9:04 pm
Merge ROIs from IMC

Last post by Seb « Fri Aug 02, 2019 7:52 pm
Replies: 2
by Seb » Thu Aug 01, 2019 6:53 pm

2 Replies

2272 Views

Last post by Seb
Fri Aug 02, 2019 7:52 pm
Cell population frequencies in HistoCat

Last post by DenisSchapiro « Fri Aug 02, 2019 6:33 pm
Replies: 12
by mattbliss90 » Tue Jul 24, 2018 6:12 pm
1

2
12 Replies

9726 Views

Last post by DenisSchapiro
Fri Aug 02, 2019 6:33 pm
HistoCAT++ crashing when trying to filter

Last post by RaulCatena « Fri Aug 02, 2019 7:56 am
Replies: 1
by Channels » Thu Jun 27, 2019 1:46 am

1 Replies

1932 Views

Last post by RaulCatena
Fri Aug 02, 2019 7:56 am
Histocat - Differential cell neighborhood analysis

Last post by DenisSchapiro « Wed Jul 31, 2019 7:38 pm
Replies: 3
by sbooth » Tue Apr 23, 2019 11:36 pm

3 Replies

7166 Views

Last post by DenisSchapiro
Wed Jul 31, 2019 7:38 pm
any preprocessing before doing the analysis?

Last post by dalide « Tue Jun 04, 2019 8:52 pm

by dalide » Tue Jun 04, 2019 8:52 pm

0 Replies

4185 Views

Last post by dalide
Tue Jun 04, 2019 8:52 pm
Custom masks

Last post by chipboy « Wed Apr 17, 2019 2:46 pm

by chipboy » Wed Apr 17, 2019 2:46 pm

0 Replies

3934 Views

Last post by chipboy
Wed Apr 17, 2019 2:46 pm
histoCAT on Mac - tiny display fonts

Last post by DenisSchapiro « Mon Mar 11, 2019 7:58 pm
Replies: 1
by stoh » Tue Feb 05, 2019 8:35 pm

1 Replies

2753 Views

Last post by DenisSchapiro
Mon Mar 11, 2019 7:58 pm
Histocat neighborhood analysis

Last post by sleungy « Wed Jan 09, 2019 1:32 am
Replies: 2
by sleungy » Mon Dec 31, 2018 5:00 am

2 Replies

3216 Views

Last post by sleungy
Wed Jan 09, 2019 1:32 am
Reproducibility PhenoGraph algorithm in histoCAT

Last post by DenisSchapiro « Tue Jan 08, 2019 7:52 pm
Replies: 3
by ElisaRasca » Wed Oct 31, 2018 2:32 pm

3 Replies

4142 Views

Last post by DenisSchapiro
Tue Jan 08, 2019 7:52 pm
Shannon Entropy to quantify cell heterogeneity?

Last post by sbooth « Tue Dec 11, 2018 5:30 pm
Replies: 2
by sbooth » Tue Dec 11, 2018 5:11 pm

2 Replies

2968 Views

Last post by sbooth
Tue Dec 11, 2018 5:30 pm
Please report ALL histoCAT issues in Github

Last post by DenisSchapiro « Tue Nov 20, 2018 12:17 am

by DenisSchapiro » Tue Nov 20, 2018 12:17 am

0 Replies

5102 Views

Last post by DenisSchapiro
Tue Nov 20, 2018 12:17 am
Compensation slide acquisition

Last post by sbooth « Thu Nov 15, 2018 11:03 pm
Replies: 3
by sbooth » Mon Nov 12, 2018 6:27 pm

3 Replies

4307 Views

Last post by sbooth
Thu Nov 15, 2018 11:03 pm
Rphenograph

Last post by ElisaRasca « Fri Nov 02, 2018 5:50 pm
Replies: 2
by ElisaRasca » Wed Oct 31, 2018 3:22 pm

2 Replies

3205 Views

Last post by ElisaRasca
Fri Nov 02, 2018 5:50 pm

New Topic

43 topics

Return to Board Index

Forum permissions

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum
You cannot post attachments in this forum